Software List
This page contains a partial software inventory of applications, libraries, and binary packages available on the HPC. This list is not comprehensive and is open to contributions.
Applications and Tools#
- ABINIT
- Agisoft Metashape
- Apache Spark
- Singularity (containers)
- Atsas
- BEST
- BLAT
- Bowtie 2
- BWA
- CDO
- dcraw
- Desmond
- DSuite
- FASTA
- FastQC
- FFmpeg
- FFTW
- FPLO
- FreeSurfer
- FSL
- Gaussian
- gemBS-rs
- GROMACS
- GSL
- GULP
- JAGS
- Julia
- LAAMPS
- MAFFT
- migrate-n
- MUMmer
- NAMD
- Ncview
- NiftyReg
- NWChem
- OpenRefine
- ORCA
- P4VASP
- ParaView
- pkg-config
- R (statistical software)
- Samtools
- SPSS
- STAR
- Stata
- tesseract
- TopHat
- Trimmomatic
- VASP
- VisIt
- VMD
- Wannier90
- WGrib
- Grace
- MATLAB
- RELION
Bioinformatics#
Interpreters and Compilers#
Libraries#
- ANTS
- Armadillo C++
- ARPACK
- BLAS
- CmdSTAN
- CUDA
- h5py
- HDF4
- HDF5
- LAPACK
- MPI for Python (mpi4py)
- MVAPICH2
- nbo7
- NetCDF
- NVHPC
- OpenBLAS
- OpenCV
- OpenMPI
- ScaLAPACK