A fast alignment program for genomic and protein sequence data
MUMmer is a bioinformatics program designed to align very large genomic and protein sequence datasets using an ultra-fast algorithm. The program is designed specifically to handle aligning entire genomes very quickly.
Using MUMmer on RCC Resources#
To run MUMmer via the command line, use the following format:
-[OPTIONS] argument with the list of options required for your job. Replace the
argument with your reference file and the
QUERY argument with your query file(s).