A set of analysis pipelines that process Chromium Next GEM single cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more.

CellRanger requires an environment module

In order to use CellRanger, you must first load the appropriate environment module:

module load cellranger

The HPC support the commercial CellRanger software for all users.

The license is courtesy of the College of Medicine Biomedical Sciences Department.