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FSU Research Computing Center Documentation

R on HPC

FSU Research Computing Center Documentation

Basics and General
Basics and General
High Performance Computing
High Performance Computing
- HPC Overview
- Using the HPC
  Using the HPC
- Open OnDemand
  Open OnDemand
- Other HPC Information
  Other HPC Information
Storage and Data
Storage and Data
Data Center Services
Data Center Services
Software Catalog
Software Catalog
- Software List
- Contributing
- Python
  Python
- Libraries
  Libraries
  - ARPACK
  - ANTS
  - Armadillo C++
  - BLAS
  - CmdSTAN
  - CUDA
  - HDF4
  - HDF5
  - h5py
  - LAPACK
  - MVAPICH
  - OpenBLAS
  - OpenCV
  - NetCDF
  - nbo7
  - OpenMPI
  - ScaLAPACK
- Compilers
  Compilers
- Applications and Tools
  Applications and Tools
  - ABINIT
  - ABySS
  - Agisoft Metashape
  - Apptainer
  - Atsas
  - bcl2fastq
  - BLAT
  - bedtools
  - BEST
  - Bowtie 2
  - BWA
  - CDO
  - CellRanger
  - CmdSTAN
  - dcraw
  - DFTB+
  - DosBox
  - DSuite
  - FASTA
  - FastQC
  - FastX-Toolkit
  - FFmpeg
  - FFTW
  - FigTree
  - FMRIPrep
  - FPLO
  - FreeSurfer
  - FSL
  - Gaussian
  - gemBS-rs
  - GULP
  - Grace
  - GROMACS
  - GSL
  - JAGS
  - Julia
  - LAAMPS
  - MAFFT
  - MATLAB
  - Meshroom
  - migrate-n
  - MUMmer
  - NAMD
  - Ncview
  - NWChem
  - NiftyReg
  - OpenRefine
  - ORCA
  - P4VASP
  - Panopoly
  - ParaView
  - Picard
  - pkg-config
  - R (statistical software)
  - RELION
  - Samtools
  - SPSS
  - STAR
  - Stata
  - tesseract
  - TopHat
  - TotalView
  - Trimmomatic
  - VASP
  - Wannier90
  - WGrib
  - VisIt
  - VMD
HPC Drivers Ed
HPC Drivers Ed
- Drivers Ed Overview
- Course Modules
- Module 1 - Intro to HPC
  Module 1 - Intro to HPC
- Module 2 (Track One) - SSH/Terminal
  Module 2 (Track One) - SSH/Terminal
- Module 3 (Track Two) - Open OnDemand
  Module 3 (Track Two) - Open OnDemand
- Module 4 - Python on the HPC
  Module 4 - Python on the HPC
- Module 5 - MATLAB on the HPC
  Module 5 - MATLAB on the HPC
- Module 6 - R on the HPC
  Module 6 - R on the HPC
  - R on HPC R on HPC
    Table of contents
    
    Reference Documentation Pages
  - Package Installation
  - Module Six Quiz
- Module 7 - Troubleshooting
  Module 7 - Troubleshooting
- Final Certification

R on HPC

Reference Documentation Pages#