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FSU Research Computing Center Documentation
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Basics and General
High Performance Computing
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Software Catalog
HPC Drivers Ed
FSU Research Computing Center Documentation
Basics and General
Basics and General
Overview
Using SSH
RCCTool command
RCC History
RCC User Accounts 🡥
Off-campus VPN access 🡥
Security Overview 🡥
Policies 🡥
Consulting
Service Pricing
High Performance Computing
High Performance Computing
HPC Overview
Using the HPC
Using the HPC
Connecting to the HPC
Using Linux Environment Modules
Submitting jobs to the HPC
Job Resource Planning
Slurm Job Reference
Job Troubleshooting & FAQs
Submitting GPU jobs
Open OnDemand
Open OnDemand
Open OnDemand Web Portal
OOD File Management
OOD Interactive Apps
OOD Job Management
Other HPC Information
Other HPC Information
Slurm Account list
Compiling software
Cheat Sheets
HPC Benchmarks
Classroom use
Storage and Data
Storage and Data
Storage Overview
Scratch Space
Data Transfer
Using Globus
Quota Management
Data Center Services
Data Center Services
Datacenter Overview
Rack Requirements
Extended Warranty Requests 🡥
Software Catalog
Software Catalog
Software List
Contributing
Python
Python
Python on the HPC
Cython
Conda and Anaconda
Jupyter Notebooks
Spyder IDE
MPI for Python (mpi4py)
Pycharm on Open OnDemand
PyTorch
TensorFlow
Libraries
Libraries
ARPACK
ANTS
Armadillo C++
BLAS
CmdSTAN
CUDA
HDF4
HDF5
h5py
LAPACK
MVAPICH
OpenBLAS
OpenCV
NetCDF
nbo7
OpenMPI
ScaLAPACK
Compilers
Compilers
Intel Compilers
GNU Compilers
NVHPC Compilers
Applications and Tools
Applications and Tools
ABINIT
ABySS
Agisoft Metashape
Apptainer
Atsas
bcl2fastq
BLAT
bedtools
BEST
Bowtie 2
BWA
CDO
CellRanger
CmdSTAN
dcraw
DFTB+
DosBox
DSuite
FASTA
FastQC
FastX-Toolkit
FFmpeg
FFTW
FigTree
FMRIPrep
FPLO
FreeSurfer
FSL
Gaussian
gemBS-rs
GULP
Grace
GROMACS
GSL
JAGS
Julia
LAAMPS
MAFFT
MATLAB
Meshroom
migrate-n
MUMmer
NAMD
Ncview
NWChem
NiftyReg
OpenRefine
ORCA
P4VASP
Panopoly
ParaView
Picard
pkg-config
R (statistical software)
RELION
Samtools
SPSS
STAR
Stata
tesseract
TopHat
TotalView
Trimmomatic
VASP
Wannier90
WGrib
VisIt
VMD
HPC Drivers Ed
HPC Drivers Ed
Drivers Ed Overview
Course Modules
Module 1 - Intro to HPC
Module 1 - Intro to HPC
What is HPC?
Accounts
Login Guidelines
Additional Services
Module One Quiz
Module 2 (Track One) - SSH/Terminal
Module 2 (Track One) - SSH/Terminal
Logging in via SSH
Job Submission
Data Transfer
Module Two Quiz
Module 3 (Track Two) - Open OnDemand
Module 3 (Track Two) - Open OnDemand
Logging into Open OnDemand
File Management
Interactive Sessions
Job Management
Module Three Quiz
Module 4 - Python on the HPC
Module 4 - Python on the HPC
Environments
Jupyter Notebooks
Spyder IDE
Module Four Quiz
Module 5 - MATLAB on the HPC
Module 5 - MATLAB on the HPC
MATLAB on HPC
Toolbox Installation
Module Five Quiz
Module 6 - R on the HPC
Module 6 - R on the HPC
R on HPC
Package Installation
Module Six Quiz
Module 7 - Troubleshooting
Module 7 - Troubleshooting
Asking for Help
Storage and Purchasing
Common Issues
Common Issues
Table of contents
Reference Documentation Pages
Module Seven Quiz
Final Certification
Table of contents
Reference Documentation Pages
Common Issues
Reference Documentation Pages
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Using Modules
How to find SLURM job output
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