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FSU Research Computing Center Documentation
Basics and General
Basics and General
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High Performance Computing
High Performance Computing
HPC Overview
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Using the HPC
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Other HPC Information
Other HPC Information
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Storage and Data
Storage and Data
Storage Overview
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Software Catalog
Software Catalog
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Contributing
Python
Python
Python on the HPC
Cython
Conda and Anaconda
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PyTorch
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Libraries
Libraries
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ANTS
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CUDA
HDF4
HDF5
h5py
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OpenCV
NetCDF
nbo7
OpenMPI
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Compilers
Compilers
Intel Compilers
GNU Compilers
NVHPC Compilers
Applications and Tools
Applications and Tools
ABINIT
ABySS
Agisoft Metashape
Apptainer
Atsas
bcl2fastq
BLAT
bedtools
BEST
Bowtie 2
BWA
CDO
CellRanger
CmdSTAN
dcraw
DosBox
DSuite
FASTA
FastQC
FastX-Toolkit
FFmpeg
FFTW
FigTree
FMRIPrep
FPLO
FreeSurfer
FSL
Gaussian
gemBS-rs
GULP
Grace
GROMACS
GSL
JAGS
Julia
LAAMPS
MAFFT
MATLAB
Meshroom
migrate-n
MUMmer
NAMD
Ncview
NWChem
NiftyReg
OpenRefine
ORCA
P4VASP
Panopoly
ParaView
Picard
pkg-config
R (statistical software)
RELION
Samtools
SPSS
STAR
Stata
tesseract
TopHat
Trimmomatic
VASP
Wannier90
WGrib
VisIt
VMD
HPC Drivers Ed
HPC Drivers Ed
HPC Driver's Ed
Course Modules
Module 1 - Intro to HPC
Module 1 - Intro to HPC
What is HPC?
Accounts
Accounts
Table of contents
Reference Documentation Pages
Login Guidelines
Additional Services
Module One Quiz
Module 2 (Track One) - SSH/Terminal
Module 2 (Track One) - SSH/Terminal
Logging in via SSH
Job Submission
Data Transfer
Module Two Quiz
Module 3 (Track Two) - Open OnDemand
Module 3 (Track Two) - Open OnDemand
Logging into Open OnDemand
File Management
Interactive Sessions
Job Management
Module Three Quiz
Module 4 - Python on the HPC
Module 4 - Python on the HPC
Environments
Jupyter Notebooks
Spyder IDE
Module Four Quiz
Module 5 - MATLAB on the HPC
Module 5 - MATLAB on the HPC
MATLAB on HPC
Toolbox Installation
Module Five Quiz
Module 6 - R on the HPC
Module 6 - R on the HPC
R on HPC
Package Installation
Module Six Quiz
Module 7 - Troubleshooting
Module 7 - Troubleshooting
Asking for Help
Storage and Purchasing
Common Issues
Module Seven Quiz
Final Certification
Table of contents
Reference Documentation Pages
Accounts
Reference Documentation Pages
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