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SimNIBS

An open source software package for the Simulation of Non-invasive Brain Stimulation

Homepage Version(s): 4.5.0

SimNIBS requires an environment module

In order to use SimNIBS, you must first load the appropriate environment module: 

module load simnibs

This application is available in Open OnDemand.

First, you must upload your data onto the HPC. Or, if your files are small, you can upload them directly using Open OnDemand

Accessing SimNIBS on Open OnDemand#

  1. Log into Open OnDemand
  2. In the top navigation bar, select "Interactive Apps" and then from the drop down, "SimNIBS".
  3. Select the Slurm Account/partition that you want to use for your job. If you leave this blank, the app will run in our genacc_q account/partition.
  4. Fill out the rest of the job submission form with your desired specifications.
  5. Click "Launch" to queue your job.
  6. When your interactive job has started, click Launch.
  7. A new tab will open, and the SimNIBS Application will launch shortly after.

Note

More information on Launching Interactive Apps through Open OnDemand