FigTree
FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures.
If necessary, upload your data onto the HPC. Or, if your files are small, you can upload them directly using Open OnDemand
Accessing FigTree on Open OnDemand#
- Log into Open OnDemand
- In the top navigation bar, select "Interactive Apps" and then from the drop down, "FigTree".
- Select the Slurm Account/partition that you want to use for your job. If you leave this blank, the app will run in our genacc_q account/partition.
- If necessary, alter the default job parameters. Otherwise, leave the default job parameters as is.
- Click "Launch" to queue your job.
- Once your interactive job has started, click Launch.
- A new tab will open, and the FigTree Application will launch shortly after.