Software List
This page contains a partial software inventory of applications, libraries, and binary packages available on the HPC. This list is not comprehensive and is open to contributions.
Applications and Tools#
- ABINIT
- ABySS
- Agisoft Metashape
- Apptainer
- Atsas
- bcl2fastq
- bedtools
- BEST
- BLAT
- Bowtie 2
- BWA
- CDO
- CellRanger
- dcraw
- DosBox
- DSuite
- FASTA
- FastQC
- FastX-Toolkit
- FFmpeg
- FFTW
- FigTree
- FMRIPrep
- FPLO
- FreeSurfer
- FSL
- Gaussian
- gemBS-rs
- GROMACS
- GSL
- GULP
- JAGS
- Julia
- LAAMPS
- MAFFT
- Meshroom
- migrate-n
- MUMmer
- NAMD
- Ncview
- NiftyReg
- NWChem
- OpenRefine
- ORCA
- P4VASP
- Panopoly
- ParaView
- Picard
- pkg-config
- Samtools
- SPSS
- STAR
- Stata
- tesseract
- TopHat
- Trimmomatic
- VASP
- VisIt
- VMD
- Wannier90
- WGrib
- R (statistical software)
- Grace
- MATLAB
- RELION
Bioinformatics#
Interpreters and Compilers#
Libraries#
- ANTS
- Armadillo C++
- ARPACK
- BLAS
- CmdSTAN
- CUDA
- h5py
- HDF4
- HDF5
- LAPACK
- MPI for Python (mpi4py)
- MVAPICH
- nbo7
- NetCDF
- OpenBLAS
- OpenCV
- OpenMPI
- ScaLAPACK